Package: ptm
Type: Package
Title: Analyses of Protein Post-Translational Modifications
Version: 1.0.1
Authors@R: person("Juan Carlos", "Aledo", email = "caledo@uma.es", role = c("aut", "cre"))
Description: Contains utilities for the analysis of post-translational
        modifications (PTMs) in proteins, with particular emphasis on
        the sulfoxidation of methionine residues. Features include the
        ability to download, filter and analyze data from the
        sulfoxidation database 'MetOSite'. Utilities to search and
        characterize S-aromatic motifs in proteins are also provided.
        In addition, functions to analyze sequence environments around
        modifiable residues in proteins can be found. For instance,
        'ptm' allows to search for amino acids either overrepresented
        or avoided around the modifiable residues from the proteins of
        interest. Functions tailored to test statistical hypothesis
        related to these differential sequence environments are also
        implemented. Further and detailed information regarding the
        methods in this package can be found in (Aledo (2020)
        <https://metositeptm.com>).
License: GPL (>= 2)
URL: https://bitbucket.org/jcaledo/ptm,
        https://github.com/jcaledo/Rptm, https://metositeptm.com
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
Depends: R (>= 4.0.0)
Imports: bio3d (>= 2.3-4), curl, graphics, httr, jsonlite, stats
Suggests: knitr, markdown, testthat
NeedsCompilation: no
Packaged: 2026-07-08 06:23:37 UTC; root
Author: Juan Carlos Aledo [aut, cre]
Maintainer: Juan Carlos Aledo <caledo@uma.es>
Config/pak/sysreqs: libssl-dev
Repository: https://jcaledo.r-universe.dev
Date/Publication: 2024-05-22 02:40:57 UTC
RemoteUrl: https://github.com/cran/ptm
RemoteRef: HEAD
RemoteSha: d9386eb060f85e9fc983793675a7f1fd086a23a4