{ "_id": "6a105686acfb0bcc41ca2b2d", "Package": "ptm", "Type": "Package", "Title": "Analyses of Protein Post-Translational Modifications", "Version": "1.0.1", "Authors@R": "person(\"Juan Carlos\", \"Aledo\", email = \"caledo@uma.es\", role = c(\"aut\", \"cre\"))", "Description": "Contains utilities for the analysis of post-translational\nmodifications (PTMs) in proteins, with particular emphasis on\nthe sulfoxidation of methionine residues. Features include the\nability to download, filter and analyze data from the\nsulfoxidation database 'MetOSite'. Utilities to search and\ncharacterize S-aromatic motifs in proteins are also provided.\nIn addition, functions to analyze sequence environments around\nmodifiable residues in proteins can be found. For instance,\n'ptm' allows to search for amino acids either overrepresented\nor avoided around the modifiable residues from the proteins of\ninterest. Functions tailored to test statistical hypothesis\nrelated to these differential sequence environments are also\nimplemented. Further and detailed information regarding the\nmethods in this package can be found in (Aledo (2020)\n).", "License": "GPL (>= 2)", "URL": "https://bitbucket.org/jcaledo/ptm,\nhttps://github.com/jcaledo/Rptm, https://metositeptm.com", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-09 07:40:46 UTC", "User": "root" }, "Author": "Juan Carlos Aledo [aut, cre]", "Maintainer": "Juan Carlos Aledo ", "Config/pak/sysreqs": "libssl-dev", "Repository": "https://jcaledo.r-universe.dev", "Date/Publication": "2024-05-22 02:40:57 UTC", "RemoteUrl": "https://github.com/cran/ptm", "RemoteRef": "HEAD", "RemoteSha": "d9386eb060f85e9fc983793675a7f1fd086a23a4", "MD5sum": "65f55c12855605b8de74aebb7794da16", "_user": "jcaledo", "_type": "src", "_file": "ptm_1.0.1.tar.gz", "_fileid": "88910ee200ed77b5857344cc70df03800f6b1b5cbba947b280c3ec9223e3a998", "_filesize": 1317987, "_sha256": 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"httr", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "jcaledo", "count": 7, "uuid": 10573051 } ], "_userbio": { "uuid": 10573051, "type": "user", "name": "Juan Carlos Aledo" }, "_downloads": { "count": 366, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ptm" }, "_devurl": "https://bitbucket.org/jcaledo/ptm", "_searchresults": 18, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/ptm.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "jcaledo", "_cranurl": false, "_releases": [ { 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