{ "_id": "6a1f32afb401979e73427fcc", "Package": "EnvNJ", "Type": "Package", "Title": "Whole Genome Phylogenies Using Sequence Environments", "Version": "0.1.3", "Authors@R": "person(given = \"Juan Carlos\",\nfamily = \"Aledo\",\nrole = c(\"aut\", \"cre\"),\nemail = \"caledo@uma.es\",\ncomment = c(ORCID = \"0000-0002-3497-9945\"))", "Description": "Contains utilities for the analysis of protein sequences\nin a phylogenetic context. Allows the generation of\nphylogenetic trees base on protein sequences in an\nalignment-independent way. Two different methods have been\nimplemented. One approach is based on the frequency analysis of\nn-grams, previously described in Stuart et al. (2002)\n. The other approach is\nbased on the species-specific neighborhood preference around\namino acids. Features include the conversion of a protein set\ninto a vector reflecting these neighborhood preferences,\npairwise distances (dissimilarity) between these vectors, and\nthe generation of trees based on these distance matrices.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 07:31:24 UTC", "User": "root" }, "Author": "Juan Carlos Aledo [aut, cre]\n()", "Maintainer": "Juan Carlos Aledo ", "Config/pak/sysreqs": "libglpk-dev make libicu-dev libxml2-dev zlib1g-dev", "Repository": "https://jcaledo.r-universe.dev", "Date/Publication": "2021-09-27 09:50:02 UTC", "RemoteUrl": "https://github.com/cran/EnvNJ", "RemoteRef": "HEAD", "RemoteSha": "e5e6a81a21b56cd9eabe67f964b1cea227303b8d", "MD5sum": "153ee0031fd886826454e38f469accc0", "_user": "jcaledo", "_type": "src", "_file": "EnvNJ_0.1.3.tar.gz", "_fileid": "78b2abb264fc65261ba708b2d97f1ad0a06fb8bc81a93dea1688685e167bd244", "_filesize": 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